Training in progress, epoch 1

.gitignore

@@ -0,0 +1 @@
+checkpoint-*/

config.json

@@ -0,0 +1,40 @@
+{
+  "_name_or_path": "/mnt/nvme01/huggingface/models/Dmis-Lab/biobert-v1.1/",
+  "architectures": [
+    "BertForTokenClassification"
+  ],
+  "attention_probs_dropout_prob": 0.1,
+  "classifier_dropout": null,
+  "gradient_checkpointing": false,
+  "hidden_act": "gelu",
+  "hidden_dropout_prob": 0.1,
+  "hidden_size": 768,
+  "id2label": {
+    "0": "B-GENE",
+    "1": "E-GENE",
+    "2": "S-GENE",
+    "3": "O",
+    "4": "I-GENE"
+  },
+  "initializer_range": 0.02,
+  "intermediate_size": 3072,
+  "label2id": {
+    "B-GENE": 0,
+    "E-GENE": 1,
+    "I-GENE": 4,
+    "O": 3,
+    "S-GENE": 2
+  },
+  "layer_norm_eps": 1e-12,
+  "max_position_embeddings": 512,
+  "model_type": "bert",
+  "num_attention_heads": 12,
+  "num_hidden_layers": 12,
+  "pad_token_id": 0,
+  "position_embedding_type": "absolute",
+  "torch_dtype": "float32",
+  "transformers_version": "4.28.1",
+  "type_vocab_size": 2,
+  "use_cache": true,
+  "vocab_size": 28996
+}

pytorch_model.bin

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:80ff6c4ab66fe3f145e8ec942d4369995a57f8d74454cb0293d25979ce5afac9
+size 430966698

runs/Sep01_15-57-02_andlab-server/1725206227.2989707/events.out.tfevents.1725206227.andlab-server.3438106.10

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:9f80f6d1c8f854a554f87c435e9e4f9acc6b8bf1e8be4da0cda01ed745f4cc5c
+size 5892

runs/Sep01_15-57-02_andlab-server/events.out.tfevents.1725206227.andlab-server.3438106.9

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:83fffe8f93b1a3333ef3cb897b355ef6169af7657ad092418e7ff6565766998f
+size 4246

runs/Sep01_15-58-33_andlab-server/1725206316.4608192/events.out.tfevents.1725206316.andlab-server.3438106.12

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:376f6fb74c09f86e7a61533a3805dc3443ad6e4dd6d46ef1fea4eec7bf3a7a6d
+size 5892

runs/Sep01_15-58-33_andlab-server/events.out.tfevents.1725206316.andlab-server.3438106.11

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:be5a947e7927e49e2b5414295cfcb879c875fd4cd5fac3df6597c7e09a8ad6a0
+size 4512

special_tokens_map.json

@@ -0,0 +1,7 @@
+{
+  "cls_token": "[CLS]",
+  "mask_token": "[MASK]",
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "unk_token": "[UNK]"
+}

tokenizer_config.json

@@ -0,0 +1,15 @@
+{
+  "clean_up_tokenization_spaces": true,
+  "cls_token": "[CLS]",
+  "do_basic_tokenize": true,
+  "do_lower_case": false,
+  "mask_token": "[MASK]",
+  "model_max_length": 512,
+  "never_split": null,
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "strip_accents": null,
+  "tokenize_chinese_chars": true,
+  "tokenizer_class": "BertTokenizer",
+  "unk_token": "[UNK]"
+}

training_args.bin

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3d21e3a3cfa3e0940bd4fa1b32f11e3cbde53f5de995c8830a3cb1535acc5c1b
+size 4024